This data contains metrics for normalized RNA-sequencing read counts from soybean cotyledon across three time stages of development. Early stage cotyledons were collected four days after planting and were green but closed. Middle stage cotyledons were collected while green and open, soon after the plant generated its first set of unifoliate leaves. Late stage cotyledons were collected immediately after the initiation of yellowing and shrinking. The metrics include the log fold change, log counts per million, likelihood ratio, p-values, and FDR values for all genes and all pairwise combinations of treatment groups.
a RData instance, 1 list per treatment group combination
and 1 row per gene
A nested list of length 3. Each list contains the metrics for the 73,320 genes for one treatment group combination.
Normalized soybean cotyledon metrics
ID gene name
logFC log fold change
logCPM log counts per million
LR likelihood ratio
PValue p-value
FDR FDR value
soybean_cn for information about the treatment
groups