Raw and subsetted soybean leaves iron-metabolism metrics

Source: R/data-soybean_ir_sub_metrics.R

This data contains metrics for raw RNA-sequencing read counts from a soybean dataset that compared leaves that were exposed to iron-rich (iron-postive) soil conditions versus leaves that were exposed to iron -poor (iron-negative) soil conditions. The data was collected 120 minutes after iron conditions were initiated. The metrics include the log fold change and the p-values for all genes and all pairwise combinations of treatment groups. To save on size, this example dataset was generated by obtaining a random subset of 1 out of 10 genes from the original resource.

data(soybean_ir_sub_metrics)

Format

a RData instance, 1 list per treatment group combination and 1 row per gene

A nested list of length 1. The list contains the metrics for the 5,604 genes for the one treatment group combination.

Details

Raw and subsetted soybean leaves iron-metabolism metrics

  • ID gene name

  • logFC log fold change

  • PValue p-value

References

Moran Lauter AN, Graham MA. NCBI SRA bioproject accession: PRJNA318409.

See also

soybean_ir_sub for information about the treatment groups